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my gff file has intron annotations but they disappear in the gtf.
I tried different versions of gtf but they don't work for me and only the standard default version creates an output and that does no…
xyz0o updated
3 months ago
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I'm seeing a much larger increase in rendering time from adding a blur filter to an image on v0.33.0 and later than earlier versions
Rendering this svg:
```svg
```
Testing with: `./r…
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## Bug report
Running nextflow@23.10.0 together with charliecloud@0.34 yields an error:
`error: can't run directory images from storage (hint: run by name)`
### Expected behavior and actual …
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Please consider supporting the pairwise mapping format of minimap2:
https://github.com/lh3/miniasm/blob/master/PAF.md#paf-a-pairwise-mapping-format
Note that minimap2 also supports outputting SAM.…
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Get Encoded String (Container) seems not working with +
`RunPlugin("plugin://script.skinvariables/?info=get_encoded_string&window_id=Home&window_prop=Encoded.ListItem.Studio&&$INFO[…
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Hi, I have a annotation file in gtf format. How can I convert it into gff3 format. I shared a chunk of data for an example.
```
chr01 AUGUSTUS gene 1005380 1007676 . - . …
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**BerliOS Feature Request #5484**
**Date:** 2012-January-18 02:08
**Submitted By:** venko
**Category:** User Interface
**Assigned To:** tomch
**Priority:** 5
#
Date: 2012-Jan-18 02:08
Sender: venko…
tomcw updated
9 years ago
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Hi,
I'm exploring this wonderful software as a way to get a comprehensive CHM13 TE annotation file for downstream analysis of RNASeq data. The other bits of software I am using requires gtf, rather …
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Have you any plans to include the EU's Participant Identifier codes? Widely used around the world for applications and partnerships in European research and educational exchange programmes.
ghost updated
2 months ago
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This isn't really a bug *or* a feature request, and is related to #219. It took me a while to figure out this behavior (default table 1 allowed start codons are AUG, UUG and CUG) and that there was a …