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I work on Gram-positive actinobacteria, which can frequently encoded alternative starts. I've noticed some genes are annotated with a wrong start (frequently too long to comply with an ATG start inste…
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I tested the construction of the bacterial index on a Laptop with OS X Sierra and 16 GB RAM. Most of the steps are fine and fit well in the memory, except "CONSTRUCTING SA + KLCP IN PARALLEL". We shou…
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Hi:)
I ran kraken2.1.2 for my mice gut microbiome shotgun metagenomic analysis. I built a custom db by using the following command
```
kraken2-build --download-taxonomy --db refseq
kraken2-build …
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**V doctor:**
```
OS: macos, macOS, 11.6, 20G165
Processor: 4 cpus, 64bit, little endian, Intel(R) Core(TM) i5-6267U CPU @ 2.90GHz
CC version: Apple clang version 13.0.0 (clang-1300.0.29.3)
g…
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Hi @colindaven @sannareddyk @B1T0 @Colorstorm @BioNij
Wochenende ran well when we inputed cfdna fastq profiles containing human reads as well with other pathogenic reads.
We were interested in…
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Hello there,
first i wanted to thank you for your great work!
When i shut off the AC after cooling / drying with the original remote, the Fan keeps blowing 2h and Vanes are nearly shut.
This wi…
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Dear developers,I hope this message finds you well.I ran Eggnog Mapper with the parameters "-tax scope bacteria" and without the "-tax scope bacteria" parameter on my bacterial genomes. I noticed …
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Some / many of our curiosities with MBD data could be related to non target species in data
see https://github.com/laurahspencer/DuMOAR/issues/26#issuecomment-1613501939
I think it is worth wh…
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Hello:
This is a great software. If I want to use this software on plants and want to find HGT events from bacteria and fungi, do I have to include plants or just bacteria and fungi in my database .
…
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Hello,
Can someone explain this format or have a tool to summarize the outputs?
Something that can take the file and transform by ranking:
121001 root bacteria
100010 root Proteobacteria
I a…