-
We need from each sub-group is a contribution of 2-3 paragraphs describing your group's hackathon successes and ongoing activities. Also (to save Mark look-up time) please list all authors from your …
-
Working with several different sequencing runs of various qualities I am trying to develop intuition for what reasonable quality filtration parameters are in the function `filterAndTrim`. The relevant…
-
Hi @jmschrei
does BPNet code support arbitrary sequence length?
https://github.com/jmschrei/bpnet-lite/blob/master/bpnetlite/bpnet.py
vitkl updated
3 months ago
-
I am trying to re-process the [data from Grun et al 2016](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2142263) (a CEL-Seq paper), and I am getting very low counts from kallisto and bustools,…
-
Hello,
I am currently struggling with metagenomes obtained from environmental biofilms (river rocks). I have 50 metagenomes but I obtain only 100 checkV high-quality viruses. I would expect a lot m…
-
Hello,
Thank you for making this useful tool, my question is the following,
I would like to know, when i'm making a pangenome from diverse strains of Streptococcus iniae species, there are some…
-
I have completed a basic Summary statistics of the data and printed a few plots. But as Genome data is not our field of study, we need more help from the research team and the internet to get ideas fo…
-
The service-info for sequence collections will need to inherit from [this specification](https://github.com/ga4gh-discovery/ga4gh-service-info/blob/develop/service-info.yaml) but additional fields can…
-
https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L860
Are these types of phylogenetic trees used very often to analyze similarities…
-
### Discussed in https://github.com/GreenleafLab/ArchR/discussions/1319
Originally posted by **wuv21** March 3, 2022
Hi!
Been running into an issue similar to #562 and #483 with the same e…