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Hi,
I would like to use mygene with R to convert entrezid from one species (a non model species, taxid= 56716) to zebrafish (basically I need the homologous genes), but from the vignette is not clear…
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Hi,
CPDB calculates the mean values in the output file "means.txt" as the mean between interaction partner_a & partner_b.
Problem_1:
A high mean might be misleading if partner_a has a very high…
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**Describe the bug**
There is something fishy with `NM_030582.4`. Take, e.g., this deletion that maps to this transcript: [`NC_000021.8:g.46924426_46924427del`](https://variantvalidator.org/service/v…
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> tr2g2
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Hi @cschlaffner :
Can you explain in details why we can not do the mapping to taxonomies like _Yeast_ or _E.coli_. This issue can be used to trigger the discussion with **ENSEMBL** and explain the…
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Hi,
I am trying to use pyensembl with the GTF for Gencode v19 as I find the pyensembl interface easy to work with, but I need a more highly curated set of transcripts than the ensembl data.
I am usi…
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When trying to refer to ensembl transcripts we cannot find by version in the 20210129 data release.
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As seen in proposed usage patterns in the upcoming G2P endpoints (https://github.com/ohsu-computational-biology/schemas/blob/apichanges/doc/source/api/proposed_schema_changes.md) as well as the pendin…
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Hello,
I'm using IsoformSwitchAnalyzeR version 2.1.2 and I'm having some trouble importing the data using importRdata. My data comes from Isoquant and I'm using both counts and tpm tables.
```…
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Hi,
When running NATMI (docker) on bulk data from mouse with Ensembel IDs the code broke, due to a duplicated entry in ids/10090_ensembl.csv.
The duplicated id is:
ENSMUSG00000115016,AA536875
…