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Hi there
This might be my fault (I'm just getting started with pyhmmer) or related to issue
[new empty HMM segfaults when saved to file](https://github.com/althonos/pyhmmer/issues/5)
but whe…
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A user tried to run the tools `hmmsearch` and `hmmscan`, and these jobs have now been stuck in a "queued" state in Galaxy for 2 days. (The jobs have not been submitted to Slurm yet). I believe the pro…
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**Describe the bug**
Dear everyone,
I install the antismash-6-1-0 with the followed condes:
$ conda create -n antismash
$ conda activate antismash
$ conda install -y diamond=0.8.36
$ conda ins…
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Hi!
I'm attempting to install your program, but when configuring RepeatMasker it doesn't seem to find the required libraries. I'm pointing to a path that should contain them, but I get this error m…
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Hello I'm using interproscan-5.59-91.0
Everything worked fined for the first few runs then i started getting the following error:
at org.springframework.jms.listener.DefaultMessageList…
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Hi Michael
Thank you for providing a very powerful tool. I got some errors when using DRAM-v.py annotations.
**The command was :
DRAM-v.py annotate -i BH0-vs2-pass2/for-dramv/final-viral-combin…
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I'm encountering what seems like the same issue :
hmmer version: bioconda/linux-64::hmmer-3.3.2-h87f3376_2
```
$ hmmemit -h
# hmmemit :: sample sequence(s) from a profile HMM
# HMMER 3.3.2…
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I am trying to make a database with a mix of hmms, one pfam, that does not require additional arguments, and two KOfams that require them. This is part of a test I am doing for something else, so I ha…
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### Description of bug
I'm trying to assemble some data with an HMM and the --corona switch, but it was erroring out in 3.15.3 with an exception. So I updated SPAdes to 3.15.4 and running the same co…
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Hi,
Im using python 2.7.12 on Ubuntu 16.04, and I just had this problem with SearchIO.parse when handling a 'hmmer3-tab':
### Script (portion)
with open ("%s%s" %(path_hmmFile,hmmFile),'rU') as …