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I'm trying to sketch the [RVDB, the Reference Viral Genome Database](https://rvdb.dbi.udel.edu/). The clustered file is ~600 MB.
```
sourmash scripts manysketch C-RVDBvCurrent.manysketch.csv -o C-…
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Hi there
I have received genomes from numerous sources, some previously public, some not but I don't know which
So I have a set of genomes and want to see if any of them are identical to the large…
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As long as nPhase doesn't make efficient use of heuristics to drastically speed up prediction time, users will run into issues with trying to run it on large genomes and could benefit from a guide to …
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I tried to align whole genome reads (hg19) generated from pbsim using GraphAligner.
However, the program crashed when building minimizer seeder from the graph.
This is the error message that I got:…
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Hello Bao,
I have assembled a de-novo genome and would like to align it to the reference genome of a close species using AlignGraph. So far so good. I run AlignGraph with the following command:
/home…
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Hello!
I'm using modkit for a bacterial (epi)genomics project. I have a large, GC-rich bacterial genome with several methyltransferases which may or may not be expressed under culture conditions. …
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I am trying to make synteny plot for a denovo assembled genome but getting the error. Is this not meant for large size genome?
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This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…
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Hi There,
I am trying to use mTR to find tandem repeats in a large genome assembly (2.6 Gb). However, I encountered with following error:
line 9: 195240 Segmentation fault (core dumped) ./mTR n…
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Hi, in the graphShort session, is the required input file mitochondrial genome sequencing data or whole genome sequencing data?
I see a warnning:
Warning:` Please note that the SPAdes is not rec…