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All functions implemented in CoNekT Grasses Microbiome must have associated test data.
Current plans involve including rice and maize data from two manuscripts, respectively:
* [Santos-Meddellin et a…
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not necessarily a priority issue. but i think we can do this better..
heres an ex:
![image](https://user-images.githubusercontent.com/53306535/203359941-0df14c75-84dc-49f6-b8b0-d479332d6a8f.png)
…
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Maybe check out SPIEC-EASI (https://github.com/zdk123/SpiecEasi) as a way to generate synthetic microbiome data to visualize. It claims to be
> ...accompanied by a set of computational tools to ge…
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Hi @JelenaBanjac,
When I run the Microbiome Trajectory analyses, it is generated the animated longitudinal information of reference samples and I can only download this one in a .SVG format. How ca…
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Kindly comment on this issue why you are interested in this mini-project
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Hi, I am wondering whether Bracken factors the size of bacterial genome into the calculation of relative abundance. If having a defined consortium consisting of a few of known bacteria with a large va…
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The `plotAbundanceDensity` function currently allows coloring the points by a `colData` variable:
```
library(miaViz)
library(miaTime)
data("hitchip1006", package="miaTime")
tse
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Hello,
I have been using your package CCMM for mediation analysis. I noticed a potential issue that may also apply to CMMB.
I posted about it in the CRAN page for CCMM: https://github.com/cran/…
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Cross link to #672
Within the EBI/JGI GOLD's ``root > Host-associated`` hierarchy there are a many organismal groupings which are not monophyletic clades, and cannot be described by an existing NCB…
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Hi there,
I am seeing very low mapping rates (~10-15%) for my whole genome sequencing data using Kraken 2. Samples are gut microbiome samples from patients with heart disease, sequenced on Illumina…