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I get the following error when running the pipeline with Nextflow docker option
> Error executing process > 'preprocess:rename (1)'
> ...
> Command error:
> Command 'ps' required by nextflow t…
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Hello,
1. Thank you for making this really nice pipeline. When I am trying to test run AA with the following command on a LSF cluster node:
```nextflow run nf-core/circdna -profile test_AA, sing…
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I'm looking at this tutorial https://github.com/LLNL/merlin/blob/7e07b72b969afc2252a892d9658a4854f97e4bb9/merlin/examples/workflows/openfoam_wf_singularity/openfoam_wf.yaml#L13 and I'm wondering if th…
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**Description**
Hello @rpetit3 ,
We are currently using the `shigeifinder` wf in the bactopia tools, but it stucks for many hours. Please find the logs below.
> (base) gilmansiu3@gilmansiu3-Z49…
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I suggest we work through the content in the following order (but not necessarily divided into these particular episodes).
1. Workflows / pipelines (without mentioning Nextflow)
- Talk about h…
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## Bug report
### Expected behavior and actual behavior
Running nextflow script from a private repository using the `nextlfow kuberun` command produces error:
```
❯ nextflow kuberun -hub git…
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### What container were you trying to use, and how were you attempting to use it?
CC @jvhagey - have you encountered this error before?
When using `staphb/phyml:3.3.20220408` docker image, I got a…
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## Bug report
the `nextflow clone` command is written in a way that basically prevents user from obtaining the given version of source code. Some examples:
1. This command should obtain the mas…
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Hi, I am using NFCORE MAG for the first time and unable to understand the error I ran through with prokka. I have attached the error log below. I appreciate your help.
Thanks
Anu
The full error m…
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Hi,
I would like to ask for help in consequences of swapping containers for pVACtools. But first I want to explain why I'm doing this.
1) I was running predictions with your original containers but …