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### Description of bug
Currently, MultiQC does not seem to be able to pick up custom data when the file is specified in a custom configuration.
I used the test data provided in the repository to p…
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I ran
```
nextflow run -c params.config -profile nbis,conda ~/git/NBIS/pipelines-nextflow/TranscriptAssembly/TranscriptAssembly.nf
```
and got the following error :
```
Caused by:
Process …
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Getting this when using the bcbio_v1.2.4 branch on Gadi:
```
Looking for: ['python==3.7.3', 'pip', 'git', 'cython', 'bcftools==1.10.2', "openssl[version='>=1.1']", 'bedtools==2.29.2', 'samtools==1…
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Hello,
I am using conda to install AMR++ pipeline but the demo crashed while parsing nextflow.config with the following error:
(AMR++) shreya@DESKTOP-D417TM9:~/AMRplusplus$ nextflow run main_A…
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Hi there, I'm looking forward to running NeoFuse on my samples. However, I’m having several issues running it on a HPC using SLURM. I am getting the following output when I run NeoFuse using paired-en…
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Hi! First of all, thank you for this amazing tool!
MultiQC does not crash, but I am missing several custom table in my MultiQC report. I apologize if this issue already exists but I could not find …
Hoxus updated
2 years ago
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The notebooks are still Python 2 and won't run with the ported lib. The docs probably also have some Python 2 specific examples.
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**Describe the bug**
Using Python 3.8, the following warnings print on `make test` for the current `main` branch.
**To Reproduce**
Steps to reproduce the behavior:
1. Clone
2. `mamba create -y …
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Hi,
I have a clean install of bcbio and everything went fine with installation and no errors. While I tried to run sample it gave the following errors
```
[ec2-user@isamples]$ /newvolume/bcbio/…