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**1. What were you trying to do?**
Use vg giraffe to map wgs reads to a graph.
**2. What did you want to happen?**
The program to run to completion without issue, or at least provide some debuggi…
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Hi Mikko,
if you are interested, I can send you the data (a few gigs) behind this segfault if you want to debug this:
```
HG00733_3_Guppy_4.2.2_prom_MAP-TO_mbg-k5001-w2000.ms20000.ga.log:Signal 1…
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Hello!
I've been using odgi to explore graphs I've built from long read assemblies with both Minigraph/Cactus and pggb, and it's been incredibly useful (thank you !)
I have some hifi data for some…
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Hello,
I'm trying panTools for the first time to build a pangenome graph from 4 polished assemblies of ~70mb in size. I tried following the instructions, and the program starts, but then just sits t…
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- Graph construction was implemented using `rustworkx` in #234, I want to mention that the `rustworkx` python interface is remarkably optimized. Using Python, we can build all graph-downstream analyse…
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### Description of feature
As originally raised by @d4straub on [Slack](https://nfcore.slack.com/archives/CE6SDBX2A/p1684495819945059), a big issue in metagenomics/microbiome research is insufficie…
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Hi,
I'd like to use pandora to study a viral pangenome on the basis of Illumina data. All together I'm looking at 13 input MSAs. Each comprise ~300 high-quality reference sequences. I'd like to stu…
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Dear all,
We already have constructed a graph from six genomes (five newly assemblied genomes plus one backone reference). I want to focus on the non-backone references added in the graph. Can I us…
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This is all done using the latest docker image.
I'm trying to lift coordinates through a pggb graph from one assembly to another with `odgi position`. This works fine for a given path (where region…
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Hello,
I constructed the graph pangenome according to the process (https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/doc/pangenome.md (the quick start section)) you gave.
The first tw…