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From branch 73 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C27110T+S:F456L
Query: T22928C, C27110T, T22926C
No. of seqs: 33 (Canada 16 France 1 Ireland 10 Nepal 1 …
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@aviczhl2 and me tracked abunch of sublineages stemming out from LE.1 with 456X:
>LE.1.1 , LE.1.3.1 , https://github.com/cov-lineages/pango-designation/issues/2663 and Branch 107 of # 1253 (secondary…
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May be the first DeFLiRI branch.
JN.1.11.1+G22599T(S:R346I)+G8371A,C5365T+del21653_21655(S:S31-)
GISAID query: G8371A,C5365T,del21653
No. of seqs: 7(France 1 Sweden 2 Ireland 4)
First: EPI_ISL…
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cc @AngieHinrichs this is likely another misplacement due high convergence in JN.1:
It is displayed in the JN.1.30 tree but it lacks (or has it reverted) G21255T.
Instead it has C27573T
My propos…
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I spotted back weeks ago in #1502 a sublineage of JN.1.42.2 (346T) with S:S31del, it turned out to have grown a lot and more interestingly it has been sampled multiple times by GBW in American airport…
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Formerly known as branch 28 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089
JN.1.30.1 designated =
>Branch 28: JN.1.30( G21255T) > T7789C > S:R346T (G22599C)
Query:G21255T…
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While searching for KP.3.1.1. samples that might be missed due to missing coverage, I found some probable convergent KP.3 sublineages with S:S31del. I used the query: Spike_S31del, Spike_Q493E, -A131…
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Defining mutations:
KP.2 > Orf1a:P1803L (C5673T = PLPro_P240L) > C14220T > S:I934V (A24362G) > T931A, G8872A, S:N30K (T21652G)
Query: T931A,C5673T,G8872A
Samples: 7 ( 6 on Gisaid)
Countries: C…
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KP.2.3+C28714T+A1087G+A23166C(S:K535T)
GISAID query: C28714T,A1087G,A23166C
No. of seqs: 29(USA 3 France 1 Spain 1 UK 24)
First: EPI_ISL_19062811, UK, 2024-4-14
Latest: EPI_ISL_19203518, Spain…
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**EDITED**: Duplicate of #1732 where this branch was earlier misplaced as LB.1+FULL QUAD , keeping this open and the other to discuss if more unrelated branches are gathered there and to track the ful…