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When running sample data HG00119, I meet the error "No annotation.csv found." .
The following is the conf file:
#!/bin/bash
mtdb_fasta=chrM.fa
hg19_fasta=hg19RCRS.fa
mtdb=chrM
humandb=hg19RC…
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- Atom level + residue/bases level
- `get_contact_atoms` in pdb2sql has already an `allchains` parameter.
- Do we want to indicate which chains should be considered for the interface? Or should we j…
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This request was created from a contribution made by Joyce Anon on April 25, 2022 06:30 UTC.
Link: [https://gatk.broadinstitute.org/hc/en-us/community/posts/5573282748699-Error-ShouldNeverReachHereEx…
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TODO: explore whether it makes sense to
1. name a shortcut relation for all association path
2. extend OBAN model to allow the relation to be a list (interpreted as a chain)
Tending towards …
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Hello, author! EVE is a very good job, Thank you so much for your contributions to the community.
I recently encountered some problems when I was using EVE to score genetic variation. I am looking …
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It is taking around 4-5 hours to run on one exome VCF of around 90K variants
(running on Xeon 32 core processor + 120Gb Ram workstation)
Is it normal run time you expect?
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Title: Learning the language of viral evolution and escape
# General Information
## Please paste a link to the paper or a citation here:
Link: https://science.sciencemag.org/content/371/652…
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Hi,
MSISensor-pro did provide a large convenience to determine the MSI status for tumor-only samples by building the baseline of PON.
According to our knowledge, pathogenic mutations in MMR gene…
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Sorry if I've missed it somewhere in the issues, but I couldn't find any discussion of which operators the api will support and where they will be included. In the examples I created for the logic mo…
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A bit of a recap from what I mentioned in the January meeting #67
I found these crystal structures from the [Protein Data Bank](https://www.rcsb.org). These provide more evidence that Fenarimol an…