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My favorite instance of the Mol* viewer is the one on the PDB website. See example: https://www.rcsb.org/3d-sequence/1NQ2
I think we may want a similar design as this.
Some docs: https://www.rcsb.or…
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Error running hmmscan: Fatal exception (source file p7_pipeline.c, line 714):
Target sequence length > 100K, over comparison pipeline limit.
(Did you mean to use nhmmer/nhmmscan?)
How do I proc…
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this issue is for bringing attention to specific search features or strategies that we want to incorporate into our search interface (for both the variant-centric and VTB views), to drive our data mod…
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I haven't yet had a chance to start editing the code (and maybe I could streamline this), but why is this needed as opposed to putting these options into the single final run script?
```
python ..…
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### Context
The glycoprotein complex (GPC) is the only surface protein of the Lassa virus (LASV) and plays a crucial role in mediating entry into host cells. It is also a primary target for neutr…
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Dear developers,
I'm trying to use ColabDesign AF to design a sequence using the `fixbb` protocol fixing sites with a list of positions as follows:
```python
model = mk_afdesign_model(protocol=…
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[GROMACS tutorial](http://www.mdtutorials.com/gmx/complex/01_pdb2gmx.html )
[GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design](https://doi.org/10.1021/acs.jcim.2c0004…
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VMD is a molecular graphics program designed for the display and analysis of molecular assemblies, in particular biopolymers such as proteins and nucleic acids. VMD can simultaneously display any nu…
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An interesting point was raised by Aya: how can we be sure the plasmid contained in the mother cell will be transferred to the minicell?
It was then suggested that we look at the iGEM Vilnius-Lithu…
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As of right now, Cartoflow only creates an output for genes whose protein product is directly binding to my chemical input. It would be great if Cartoflow included all of the gene/protein interactions…