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PathGO has terms that describe proinflammatory processes at the cellular level:
1. PATHGO_0000005 (non-specific T cell activation factor)
2. PATHGO_0000010 (mediates non-specific T-cell activation…
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Hi,
As discussed during BioC, I mentioned it would be cool to have a column in rowData/colData to filter bad samples/features.
I can do the pull request, but I wanted to discuss first here.
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Hi there,
Thank you so much for developing such a wonderful tool for all of us! I was wondering if I might get your opinion on my curve/lineage data to see if I need to tweak some of the initial pa…
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Working on #1259, the CSV file Debra provided has a `Frag_id` column. In our `BaseChant` model, we have a commented-out `fragmentarium_id` field. Looking at the PR where we established the `BaseChant`…
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I'm seeing runs with truncated bam/log files. The version is 0.5.1 and the command being run is:
dorado duplex --verbose sup,5mC_5hmC,6mA xad.pod5 > xad.bam 2> xad.log &
[2023-12-29 07:46:27.334…
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This is an enhancement request.
It would be nice to have basic html syntax checking.
It would be nice if this tool can also check links (internal or external). However, internal links is more impo…
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Follow-up to https://github.com/scylladb/scylladb/issues/6033 , to deal specifically with single cell tombstones.
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Hi,
I'm running `cellsnp-lite` (`v1.2.0`) and `vireo` (~`v0.5.5`~ `v0.5.0` from pip) to demultiplex a 3' 10X scRNA-seq dataset with cells from 8 human donors.
These cells were pooled and run over …
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As I see it, we need to pick a one-liner description which needs at the very least a tech-level, and a mood. I propose that we pick the descriptor types and create a poll for each with results hidden…