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Initially this is being done via a UI query and UI download but near term can be converted to GeneWeaver API calls:
https://geneweaver.org/help/#api
**Name of the dataset**
GeneWeaver SARS ex…
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### Description of the bug
Viralrecon has worked perfectly for our SCV2 and some hybrid capture protocols (with the metagenomic side). However, when I ran the pipeline by passing a custom bed file an…
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Hello,
I am trying to run the ARTIC pipeline on the Singularity profile with the new ARTIC V4 primer scheme set (https://github.com/artic-network/primer-schemes).
I am running the Nextflow pipeli…
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Upper respiratory tract microbiome profiles in SARS-CoV-2 Delta and Omicron infected patients exhibit variant specific patterns and robust prediction of disease groups – Shankha Nath – Microbiology Sp…
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Dear Developers,
I have installed the pipeline when I reached the running step and submitted the run using this command:
` $ python3 /mnt/e/Bioinformatics/tools/MGI_SARS-CoV-2_Multi-PCR_v1.…
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I'm noticing that if you 1st map data to human, take only un-mapped reads and then run periscope, the final periscope counts are the same, however the mapped read count differs.
Using all reads
…
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Spotted on bubble-up: the page for `/` is slow, but seemingly only with a few specific orgs - worst offender is `/investigating-events-following-sars-cov-2-infection/` , with `opensafely-internal` run…
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This step follows on from Issue #2 where you will have prepared your ligands from SMILES strings using Gypsum-DL. For this virtual screen I have used the [SARS-CoV2 helicase - holo complex, nsp13](htt…
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The Bio-atomspace dataset has humans vs SARS-CoV-2 genes/proteins interaction and we need to give the user an option to include/not this relationships.
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We have examples where there is an amplicon with two right-hand primers. Neither primer is excluded at the primer/amplicon identification stage, and both are provided to cylon.
Observed behaviour: …