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This issue tracks changes we should implement as noticed during June 2024's Intro scRNA-seq training.
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Hi,
I have previously used Xenome to classify mouse reads from human reads from bulk PE RNA-seq data and the tool has worked very well. Now I would like to apply the same technique for scRNA-seq da…
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Project UUID: f81efc03-9f56-4354-aabb-6ce819c3d414
Project Title: Cell hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Project Short Name: Multip…
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Hi, can you share me the markers you used for scRNA-seq cell cell type annotation.Thanks.
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Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development (https://www.nature.com/articles/s41467-022-28067-4)
The scRNA-se…
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@adkinsrs When doing a gene search with single gene view, there is a message "There was an error drawing the plot." for P1, P12, P100, mouse, scRNA-seq, utricular hair cells (Kelley). Vestibular profi…
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Dear @czarnewski
Thanks for your beautiful paper and code!
I want to use scRNA-seq data with cell type annotation to deconvolution my bulk RNA-seq.
But I only find scRNA-seq raw data and cod…
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To expand the MC2 data model, data type-specific metadata models should be assembled and reviewed by the community via the Request for Comments process. One strategy for implementing is as follows:
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Hello
Thank you very much for your great work! I run scAllele and got a vcf output. My cells are geneA exon5 knock out cells by CRISPR. But scAllele did not find any deletion in exon5 of geneA.
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Hello. Thank you for this package. I'm doing an integration analysis using more than 40 scATAC samples. However, I do not have scRNA data from the same cells. I tried doing the label transfer using th…