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Hi,
I am calling variants over a 12 Kb region for about 700 individuals. It seems to have stuck at a region which includes short tandem repeats. I am also including the reference genome sequence o…
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@lindseyfaye @rsmoak, let's put together the results we have so far into a PPT format. Perhaps one slide per result + any key method information. I'm currently working on the OrthoMCL results, and pla…
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Hi,
I am using SPAdes on our working machines and it's working like a charm except for only one machine. I am not really able to find out why it fails for this specific machine (SPAdes version and py…
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Hello,
The terms 'GO:0005724 nuclear telomeric heterochromatin' and 'GO:0031933 telomeric heterochromatin' will be obsoleted, see https://github.com/geneontology/go-ontology/issues/19086.
The t…
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**What is this request referring to?**
#487
Parent | labels | Synonyms | about
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SO:0000186 | LTR/Copia | RLC, Ty1, Copia, LTR-Copia | LTR retrotransposon in the Copia superfami…
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Hello!
I have 2 questions about the output of Flye visualized using Bandage for a bacterial genome assembly (PacBio RSII data, genome size ~ 1.5 mb, average coverage ~ 30). I've attached the Bandag…
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I am using a very recent github pull of CANU (v2.0-development +312 changes (r9805 b6670537326b323d2837d7801d089f4f52b860c2)) in order to assembly our hifi pacbio data.
In terms of continuity this ve…
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hello HBC community,
one of the 'problems' of Homebrew Cask is that it requires constant maintainance to keep working. any Cask with a version number needs to be updated every time a new version of…
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Short tandem nucleotide repeats can expand to cause genetic disease. ExpansionHunter can detect targeted STRs from bam files and generate VCFs. Scout can display these.
Problem:
MIP generates STR…
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Hello,
The first flye assembly of my heterozygous (2.5 Gb haploid genome, repeat-rich, and with highly-divergent haplotypes) just completed and I have a few questions/comments about it.
The command …