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ATM
```shell
$> datalad containers-add blah -u shub://ReproNim/containers:bids-validator--non-existent
[ERROR ] 'image' [containers_add.py:_resolve_img_url:42] (KeyError)
```
traceback/detail…
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I git the singularity container of mixer (https://github.com/comorment/mixer). I have installed mixer through singularity (figure shows), but when I run mix.py, the log file noted the version was stil…
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Currently there are several scripts that get the data needed for AnnoTater. For the data sets that will use Diamond they must be indexed and currently the scripts have a Docker command hardcoded. Th…
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Hi,
When I tried running the python HOME_Bio.py config_file.txt command, I got an error because of the os.seteuid() command in the script.
{
Traceback (most recent call last):
File "HOME_Bi…
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## Description of the bug
I get a permission error when running the nf-core download command through Docker with the -u option to set the user & group IDs (as described in the docs https://nf-co.re…
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`singularity run mhm.sif mhm-download -b master -d 1 -p test_domain` downloads the data, but this can be made with Python.
e.g. https://github.com/mhm-ufz/mHM/blob/develop/pybind/examples/01_simple…
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Hello. During the build or make python module I am getting error:
cc1: fatal error: /home/labs/testlab/alexkon/singularity/ubuntu22.04_clean/classy/classy/classy2.10/class_public-2.10/python/../pytho…
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Hi,
I am trying to run AF-multimer and my script ran for about 3ish hours and I get the following error. Not sure how to resolve this and would appreciate any advice.
`singularity exec --nv -B…
apal6 updated
6 months ago
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## Images
### mysql
- [x] volume mount database files for host not to edit it easily and opportunity to do it is rare
- when using it in other host, share database via temporary container
- [x] …
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# Short Description of the issue
When running a container image without /bin/sh inside, then InterLink Slurm Plugin runs the container and fails with
```
2024/10/15 16:18:29 info unpack…