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**Is your feature request related to a problem? Please describe.**
We can currently (only) provide a PED file for describing a case. It would be very helpful to augment this as we currently alrea…
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This relates to cases where a study contains a sample which appears to be part of a genetic profile, but the sample is not present in data_gene_matrix.txt, or the gene panel id value is 'NA' or missin…
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If I have files output from AA and AC, is there a way for me to experiment with the cycle view /genome browser to investigate potential larger structures formed from my cycles/paths? Would be good if …
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Hi Thank you for this tool we are trying to use to for our dataset and we are getting following error:
Output and error:
```
..Reading mappability for chromosome Un_KI270746v1
skipping chrom…
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Hey guys, just wanted to check my assumptions around retrieving statement references.
**Spec Commit Hash**
7a801f0
**Question**
Is A returned when the following is true?
- A, B, and C are s…
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Hi,
I think I've gotten VarDict to run the past few days, but there are a few questions I don't really understand.
1) When I tried to run VarDict on WGS bam files without inputting region informati…
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Would it be possible to integrate the UMI-deduplication into .bam deduplication? From my understanding, `--bamRemoveDuplicatesType` currently does not support this, and I have found alternative tools…
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hello!!
When I run "smn_caller.py --manifest depth_calling/tests/test_data/NA12885.bam --genome 19 --prefix NA12885 --outDir ./ --threads 2",the error
" File "/public/home/donglijie/miniconda3/e…
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Briefly comment on this issue with reasons why you are interested in this mini-project.
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Dear author,
I do not know how to find UpdateEnvironmentMono ?can you help me?
how to run these two steps
![image](https://user-images.githubusercontent.com/25199946/48173213-bb51a380-e33d-11e8-8a6…