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Hi,
I successfully performed TCR repertoire analysis on my single cell dataset.
Now I would like to perform some statistics and visualize them based only on one of the two chains (for example calcu…
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Unfortunately, in the paper I did not understand if I can make a training dataset from BCR AIRR seq. Could you clarify in the readme and/or manuscript if it is possible and if yes if any additional st…
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@mourisl, thank you so much again for this wonderful tool and for answering questions so promptly. I had a question about how to interpret the CPK metric from trust-stats.py. Essentially, I am wonde…
kc199 updated
3 years ago
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I am trying to represent T cell data that has gone through the 10X/Cell Ranger pipeline in an AIRR compliant format. Their pipeline uses PCR amplification, so I want to assign a value to `pcr_target_l…
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2 new terms requested for HIPC:
editor preferred term: T cell receptor repertoire sequencing assay
alternate terms: TCR repertoire sequencing assay
textual definition: A sequencing assay that det…
rvita updated
3 years ago
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Hi authors,
Firstly just wanted to say this looks like a great tool, I'm really looking forward to working with it. This idea has been on my mind a lot recently, and given this is an exciting new t…
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Hello there,
this is obviously more a wish or suggested enhancement than an issue, but it would be great if the [meta-clonotype discovery section](https://tcrdist3.readthedocs.io/en/latest/metaclon…
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Hi, we want to analyze the TCR repertoires of a naive T cell cluster of our single cell data, but there are some BCRs identified in the TRUST results. Can we consider the BCRs as wrong results and dis…
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Hi
I have tried to learn more about Vidjil and have a simple question, can I use this on a Mac OS?
It only shows,
The Vidjil algorithm has been successfully tested on the following platforms :…
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https://mp.weixin.qq.com/s/Q3TSYAen_T3rEGq0HzERcg
ixxmu updated
3 years ago