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Vor lezva@ntaniqine patkanum hayoc lezun?|Hndevropakan
Vortex e arajanum Agat@?|hrabxayin aparanerum
Kisatankarjeq Qar…?|Agat
trchun Jnjxukanmaneri @ntaniqic?|Agrav
Tarva mej qani angamen bazmanum agr…
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Hello.
I recently used Braker3 (RNA + protein), which generates more BUSCO values than Maker3.
However, I have one question to be answered.
There are too many duplicated BUSCOs.
This is the co…
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Hello,
I ran into a bug running agat_convert_minimap2_bam2gff.pl from the singularity container agat_1.0.0--pl5321hdfd78af_0.sif.
When I run the command :
singularity exec --bind $DIR $DIR/bin/ag…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Have you loaded the SQANTI3.env conda environment?
- [X] I have loaded the SQANTI3.env conda environment
### …
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New term request AGAT low in lymphocytes (segal_080123183328): Arginine:glycine amidinotransferase
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@Juke34
Here is the braker3 gtf file. It is zipped as an upload of other file types is not allowed.
Best,
[Galaxy14-[BRAKER3_on_data_2_and_data_13__GTF_Annotation].zip](https://github.com/NBISwed…
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**Describe the bug**
Hello, I am having issues with getting agat_convert_sp_gff2gtf.pl to convert .gff files from the NCBI to .gtf files which are compatible with CellRanger.
Specifically, I am tryi…
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Hello,
I have these files in my pwd:
cd /project/PI/USERS/me/czi/data/tc/
[me@midway3-login3 tc]$ ls
agat_1.0.0--pl5321hdfd78af_0.sif
in.gff
out.gff
I installed AGAT via singularity:
…
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**Describe the bug**
When using agat_convert_sp_gff2gtf.pl, my output GTF file largely differs from the input GFF file.
**General (please complete the following information):**
- AGAT version: 0.…
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Dear Jacques,
Thanks a lot for creating AGAT! It is a wonderful tool. Helped me a lot.
Recently, I used "agat_sp_compare_two_annotations.pl" to compare my two genome annotation outputs, one with…