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Vor lezva@ntaniqine patkanum hayoc lezun?|Hndevropakan
Vortex e arajanum Agat@?|hrabxayin aparanerum
Kisatankarjeq Qar…?|Agat
trchun Jnjxukanmaneri @ntaniqic?|Agrav
Tarva mej qani angamen bazmanum agr…
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**Describe the bug**
agat_convert_mfannot2gff.pl
The feature starts from the very beginning of the mfannot file (position 1) is converted to position 2 in the generated gff.
**General (please co…
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I am using the script "bam_readcount_helper.py" to run bam-readcount (installed from bioconda) to generate site list. The input VCF has ~1million line. The script runs without errors except a massage …
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In order to use VEP, I made an AUGUSTUS GFF annotation file. Here you can see the GFF structure for the first gene:
```
SuperScaffold AUGUSTUS gene 1 5061 0.02 - . …
eprdz updated
1 month ago
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## Bug report
Running nextflow@23.10.0 together with charliecloud@0.34 yields an error:
`error: can't run directory images from storage (hint: run by name)`
### Expected behavior and actual …
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Please consider supporting the pairwise mapping format of minimap2:
https://github.com/lh3/miniasm/blob/master/PAF.md#paf-a-pairwise-mapping-format
Note that minimap2 also supports outputting SAM.…
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**BerliOS Feature Request #5484**
**Date:** 2012-January-18 02:08
**Submitted By:** venko
**Category:** User Interface
**Assigned To:** tomch
**Priority:** 5
#
Date: 2012-Jan-18 02:08
Sender: venko…
tomcw updated
10 years ago
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Hello,
Can `agat_convert_minimap2_bam2gff.pl` be modified to process the `X` CIGAR code in some BAM files? I have aligned IsoSeq data to genome with minimap and I have a bam file with the =/X CIGAR…
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**Describe the bug**
I am trying to perform the conversion of GFF to GTF, of one of the ncbi downloaded reference GFF file. I am finding the converted output GTF introduced additional features for th…
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my gff file has intron annotations but they disappear in the gtf.
I tried different versions of gtf but they don't work for me and only the standard default version creates an output and that does no…
xyz0o updated
4 months ago