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Note sure what the error status means. I tried running the default test bam files
refdata_path=/home/mai/Desktop/svclin/clinsv
input_path=/home/mai/Desktop/svclin/bam_files
project_folder=/home/…
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Hi I've been getting various IndexErrors relating to 2DA files. It only seems to be happening for me when editing UTI files. I have had these happen with an entirely unmodded game. I do get more of th…
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Hi,
I got pod5 files and fastq file, and want to call methylation. I know Nanopolish does not support pod5 files, so I used blue-crab to convert pod5 files to blow5 files. Then I used slow5tools to …
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**Describe the bug**
I am analyzing data from plant (cherry) samples hoping to determine viral quasispecies of Little Cherry Virus
I set up my v-pipe workflow based on the sars-cov2 tutorial
Howeve…
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This is the example code from Mike's original repo:
https://github.com/lionfish0/beelabel/blob/master/labelling/compute5.ipynb
We need to reproduce this so we can get the inputs and outputs for the a…
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Thanks for your great work! And when will you release objaverse-xl alignment rendering data?
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### Comment:
One challenge for Python 3.13 is that the location of the site_packages changes depending on which version is installed.
The GIL location is `lib/python3.13/site-packages` and the Fre…
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### Bug description
I have trained a model for 5 epochs without guided alignment. Then I trained for 5 epochs more with guided alignment. When training without guided alignment everything went fine. …
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When loading an XML project file, `DefaultProjectReader` prefers the file name information obtained from the save configuration over the actual name of the loaded project file when determining the pat…
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This comes mostly from me working on re-alignment. I'm moving the grand design I had in #26 to here, and make that pull request more about just supporting alignment info passthrough.
1. For alignme…