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https://mp.weixin.qq.com/s/dEYKrM3oW3ILt7Zaumva_A
ixxmu updated
2 years ago
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Thanks for this very useful package!
We had scaling issues with the raster scan of the whole segment bounding volume in skeleton_tricks.find_target when using 512x512x512 block sizes containing ast…
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Hi,
I have a question regarding the DE genes produced by RCTD. I can see that the list of DE genes is saved in myRCTD@internal_vars$gene_list_reg but I want to know which of the genes are specific …
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CL has this as a CNS cell:
[Term]
id: CL:0000122
name: stellate cell
namespace: cell
xref: BTO:0002316
is_a: CL:0000117 ! CNS neuron (sensu Vertebrata)
There is no def. The def in BTO is:
def: "Any …
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NeuroM seriously confuses concepts of Neuron and Morphology. Everything that currently has a name `neuron` or `Neuron` must be changed to `morphology` and `Morphology`. This way NeuroM can be clearly …
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https://mp.weixin.qq.com/s/3DlLp7xeQKR9WFmjTI0AbA
ixxmu updated
2 years ago
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What would you recommend setting for `-c `argument? I have 24 scATAC datasets. Each dataset has anywhere from 1000-10000 cells. Is 50% a good choice? The cell types are neurons (excitatory/inhibit…
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Hello,
Based on your science paper entitled "Brain cell type–specific enhancer–promoter interactome maps and disease risk association", you also performed RNA-seq in neurons/astrocytes/micorglia/…
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The ENCODE DCC would like a term created for 'brain germinal matrix'
'The germinal matrix consists of a layer of cells near the fluid-containing ventricles of the brain. It is a highly cellular and h…
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https://mp.weixin.qq.com/s/pN4qWdUszuGqr8nOJstn8w
ixxmu updated
2 years ago