seung-lab kimimaro issues

seung-lab / kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

GNU General Public License v3.0

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issues

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Increasing resolution of the vertex positions to sub-voxel level

#91 RomStriker opened 2 days ago
2
perf: speed up join close components

#90 peterlionelnewman closed 2 months ago
1
Kimimaro for skeletonizing collagen fibers - time persistence of skeletons

#89 peterlionelnewman opened 2 months ago
2
Compatibility issue with Igneous' Skeletonization

#88 SanjeevRJ closed 2 months ago
2
call kimimaro.skeletontricks.roll_invalidation_ball_inside_component using positional-only arguments

#87 jasonkena closed 3 months ago
1
feat: respect connected components for invalidation + full voxel graph support

#86 william-silversmith closed 4 months ago
0
feat: add oversegment function

#85 william-silversmith closed 5 months ago
0
feat: compute cross sectional area for vertices

#84 william-silversmith closed 8 months ago
0
parallel is negative, but only use one core

#83 xiuliren closed 1 month ago
5
increasing number of components

#82 Rajalakshmi-Palaniappan opened 1 year ago
1
Using kimimaro for voxels skeletonization

#81 ZiYuanZiWan opened 1 year ago
12
How to choose default TEASER algorithm parameters for processing

#80 liuyx599 opened 1 year ago
1
Using Kimimaro for vessel skeletonization

#79 RosieFerr opened 1 year ago
1
Progress bar stopping with parallel

#78 AlexandreDiPiazza opened 1 year ago
7
Verbose flag

#77 0xJustin closed 1 year ago
3
Usage on 3D Meshes/Clouds

#76 eyildiz-ugoe closed 1 year ago
2
Change in Skeletonisation result with Change in Volume Cropping

#75 ChristianNikolov closed 2 years ago
11
Skeleton as Binary 3D Numpy Array

#74 ChristianNikolov closed 2 years ago
11
Can't install kimimaro (Windows 64-bit, Python 3.10)

#73 ChristianNikolov closed 2 years ago
7
Make Fixing Avocados Faster

#72 william-silversmith closed 2 years ago
0
How to output the binary 3D skeleton?

#71 BoyuLyu closed 2 years ago
2
feat: adds connect_points function

#70 william-silversmith closed 2 years ago
0
Unbranched centerline between suggested points

#69 urakubo closed 2 years ago
6
Kimimaro History

#68 william-silversmith closed 3 years ago
0
perf: use the "railroad" technique

#67 william-silversmith closed 3 years ago
4
perf: check target locations in sorted order instead of scanning

#66 william-silversmith closed 3 years ago
1
perf: use updated dijkstra3d to acquire maxima cheaply

#65 william-silversmith closed 3 years ago
2
skeletontricks.find_target scaling issue

#64 chinasaur closed 3 years ago
21
feat: add Command Line Interface

#63 william-silversmith closed 3 years ago
0
Obtain Skeleton Result as Numpy Array

#62 chxii closed 3 years ago
3
feat: voxel graph support

#61 william-silversmith closed 3 years ago
1
Issue with pip installation.

#60 JacobBumgarner closed 3 years ago
2
Command Line Version

#59 william-silversmith closed 3 years ago
1
Fix Borders Doesn't Work on 2D

#58 william-silversmith opened 3 years ago
0
Option to Halt postprocessing for Crazy Skeletons

#57 william-silversmith closed 3 years ago
1
fix(intake): solid color blocks were causing errors

#56 william-silversmith closed 4 years ago
0
perf: faster somas

#55 william-silversmith closed 4 years ago
0
Question about DAF and PDRF

#54 jamesnobody closed 4 years ago
2
What is radius? How to tune scale and const?

#53 Michaelsqj closed 4 years ago
3
fix: python3.8 compiles cpp code

#52 william-silversmith closed 4 years ago
0
support python3.8?

#51 xiuliren closed 4 years ago
3
feat: add fill_holes argument

#50 william-silversmith closed 4 years ago
4
chore: loosen networkx requirement

#49 william-silversmith closed 4 years ago
0
Postprocessing Sometimes Slow

#48 william-silversmith closed 4 years ago
1
networkx version

#47 xiuliren closed 4 years ago
0
Hole Protection

#46 william-silversmith closed 4 years ago
1
Compute Cross Sectional Area

#45 william-silversmith opened 4 years ago
2
install: compile on windows

#44 william-silversmith closed 4 years ago
1
feat: avocado protection (🥑)

#43 william-silversmith closed 4 years ago
6
fix: 64-bit addressable _roll_invalidation_cube

#42 william-silversmith closed 4 years ago
0