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Hello,
I am getting the following error while running blobtools2. Could you please help me to fix this error.
Thank you for your help.
blobtools create \
--fasta /work/assemblies/asm…
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Hi Shujun,
First thank you very much for EDTA!
I have been using EDTA to identify TEs in a set of fungal genomes. I am using a self-made singularity container for this because I am running this…
reslp updated
3 years ago
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Alrighty, I'm getting to so very close to having this complete it, but not quite there yet. The `run_blobtools_create` step dies. Looking at the log file, I notice this part of the error message that …
kubu4 updated
3 years ago
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Hello,
I am trying to run diamond v2.0.10.148 using the following options.
The size of the input contigs fasta file is 229 Mb (229,607,708 bytes) and the uniprot diamond database is 29 Gb (29…
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Alrighty, the pipeline has progressed but is throwing the following error when it gets to the BUSCO step:
```
cat blobtoolkit/logs/busco/run_sub_pipeline.log
Creating specified working director…
kubu4 updated
3 years ago
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I get the following error with the test data:
isescan.py --nthread 2 NC_012624.fna proteome hmm
```
isPredict begins at Fri Sep 4 14:57:49 2020
Traceback (most recent call last):
File "/ho…
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I've installed v2.6.1 and I've set up a clean install of the conda btk environment.
However, when I run my script (on an HPC cluster), I get the below error(s):
```
Creating specified working d…
kubu4 updated
3 years ago
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https://github.com/blobtoolkit/blobtools2/blob/a3b3d0b97bffb48f2c1a67f58eb0b0d83f599882/blobtools#L50
Should this be 2.5.0 given the release number?
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Hi,
I'm attempting run the Snakemake command, but I keep getting the following error in the log file, `logs/busco/run_sub_pipeline.log`:
```python
Traceback (most recent call last):
File "/g…
kubu4 updated
3 years ago
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I'm attempting to run the pipeline (on an HPC cluster) and the `windowmasker` step is throwing the following error message:
```
Creating specified working directory /gscratch/scrubbed/samwhite/out…
kubu4 updated
3 years ago