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xiezhq
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ISEScan
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
Apache License 2.0
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ISEScan overestimation of IS elements
#58
zeineppu97
closed
1 month ago
0
Inaccurate Boundary Determination of IS Elements
#57
2021JohnSheng
opened
1 month ago
0
Translated proteome of zero bytes
#56
2021JohnSheng
opened
1 month ago
0
ISEScan Stuck in a Non-responsive State After Running for 30 Hours
#55
wanghang7410
closed
3 months ago
6
change parent to meet GFF specifications
#54
xonq
opened
8 months ago
0
Merge the sum files for condensed overview and heatmaps
#53
AhmedElsherbini
closed
8 months ago
2
ISEScan
#52
vilasben
closed
9 months ago
1
Is there anyway to get the name of IS
#51
famiji
closed
10 months ago
2
Question: IS associated with antibiotic resistance genes (ARGs)
#50
wanjinhu
closed
10 months ago
4
Translated proteome of zero bytes
#49
MiloEliot
closed
10 months ago
9
PacBio Assemblies stuck at "addNonORFcopy"
#48
olimat17
opened
1 year ago
7
different results
#47
illusion-a
closed
1 year ago
2
UnboundLocalError: local variable 'seqid' referenced before assignment
#46
IRSINGH27
closed
1 year ago
1
Overly large "transposases"
#45
clb21565
closed
2 years ago
6
Missing IS families?
#44
fgaudilliere
closed
2 years ago
3
How can we plotting/mapping many of our ISs from ISEScan results into a reference genome?
#43
rickyalfaray
closed
2 years ago
2
IS subgroups
#42
SamuelGreenrod
closed
2 years ago
2
Pangenome file such as inputfile
#41
Leytoncito
closed
2 years ago
7
Missing output files for 2 assemblies out of a large dataset
#40
biflorenzi
closed
2 years ago
5
Create LICENSE
#39
xiezhq
closed
3 years ago
0
Temporary files filling up the temp directory
#38
biflorenzi
closed
3 years ago
2
Add an array or summary, and maybe a bitmap
#37
Leytoncito
closed
3 years ago
1
Running isescan on a dataset: missing arguments error
#36
biflorenzi
closed
3 years ago
4
IS identified by ISFinder but not ISEScan
#35
moiradion
closed
3 years ago
4
can not install using bioconda
#34
wietse1
closed
3 years ago
1
Provide results in a standard file format
#33
oschwengers
closed
3 years ago
3
Remove hard coded 3rd party dependencies
#32
oschwengers
closed
3 years ago
2
Replace phmmer by diamond
#31
oschwengers
closed
3 years ago
1
Results in additional subdirectory
#30
oschwengers
closed
3 years ago
4
Unexpected Insertion Sequence
#29
vappiah
closed
3 years ago
2
ncopy4is?
#28
ewilbanks
closed
2 years ago
1
UnboundLocalError: local variable 'raworfhits' referenced before assignment
#27
FTouzain
closed
3 years ago
1
Error when running test data
#26
stanislasmorand
closed
3 years ago
2
Error running test data
#25
jananiharan
closed
2 years ago
9
error with gcc command
#24
Arkadiy-Garber
closed
3 years ago
2
Input sequence that contains multiple interspersed unknown bases
#23
raven44099
closed
2 years ago
2
Using different ORF identification.
#22
IsaS89
closed
3 years ago
1
Question about bps4IS
#21
Gonzalez-toro
closed
2 years ago
1
ISEScan not available through Bioconda?
#20
jaipadmakumar
closed
3 years ago
10
How to set number of threads?
#19
cousins
closed
4 years ago
7
Question about Results
#18
lancetxiao
closed
4 years ago
1
ISEScan-1.7.1 :: incorrect version number
#17
EricDeveaud
closed
4 years ago
1
use options for removeShortIS and translateGenome instead of setting it on constant.py
#16
EricDeveaud
closed
4 years ago
0
Problems: did not produce the out files even the job was success
#15
luongphekidz07
closed
4 years ago
1
library libssw.so not found
#14
tianrenmaogithub
closed
4 years ago
1
How to run a set of genomes in a row
#13
manuss11
closed
4 years ago
3
Is fasta file with predicted gene sequence OK?
#12
Xiaojun928
closed
4 years ago
3
Problems with FragGeneScan
#11
giuliodimaria92
closed
5 years ago
8
Test data not working
#10
janka2012
closed
5 years ago
1
Call isescan
#9
mweberr
closed
4 years ago
1
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