-
4 runs total:
* left
- all
- near nonCpG results
* right
- all
- near nonCpG results
-
Locate the sample- level metadata for this file for @jkanche
http://data.nemoarchive.org/biccn//grant/cemba/ecker/chromatin/scell/processed/align/3C/CEMBA171207_3C/
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Hey Richard (@biscuit13161)
I've been helping @dklinkebiel set up LIONS on a local system and ran into an error in the `chimericReadSearch.py` script. You're quite a bit better at python then me, w…
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Don't display all data at once for both http://epigenomics.sdsc.edu:8000/singlecell/MySeqs and http://epigenomics.sdsc.edu:8000/singlecell/AllSeqs
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- [x] change `is_staff` check to is belong to `bioinormatics` group
- [x] user who own the seqs can click submit
- [x] user from bioinormatics` group can click in every place
User groups
-…
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Hello ensembl-vep community,
Is there a possibility to define a regulatory variants in melanoma or melanocyte specific cell line?
I tried to list the available cell types in vep 96 but melanocyt…
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**Bioconductor**
* SCDE ✔ colname="Z" is the Z-score. Scde only compares between cell types. This is not what I'm after, but could include it for completeness.
* MAST ✔ colname = "Pr(>Chisq)" is the…
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Hello,
I met a problem with Arriba. Before using it on my samples I'm testing it and other tools on test dataset (positive, negative & real breast line cancer, paired-end data).
It appears that I …
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Hi,
Thanks for this useful tool:
```r
library(ENCODExplorer)
data(encode_df, package = "ENCODExplorer")
query_results_melanocyte query_results_melanocyte
Empty data.table (0 rows) of 73 col…
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http://epigenomics.sdsc.edu:8000/setqc/610/
clicking not generate qsub job
wrong 10xprocessed in '.Set_580.txt'
empty .Set_580_samplesheet.tsv
```
cat /projects/ps-epigen/outputs/setQCs/.Set_58…