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Hi @glennhickey,
I have a WGA of 63 lepidoptera species. I would like to update the alignment instead of starting from scratch. The easiest thing would be to replace a genome. I'm trying to look at…
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Hello,
I had attempted to run DRUMMER using the exome mode across my genome reads as follows:
```
mkdir -p /rhea/scratch/brussel/vo/000/bvo00030/vsc11010/results_mouse_debugging/drummer/
mkd…
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Hi again,
so I have created and indexed the shifted bam files as in the tutorial.
```R
gal
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Hello,
**Why do my predicted orf have so many stop codons inside?**
I use following workflow:
1、get thaliana ribo-seq data
2、map to reference genomes
3、filtering data length（for example, choos…
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Thanks for the tool. I wanted to ask if it's possible to get the 5' UTR of the orthologs computed or is that something that can't be done in the absence of transcript data for some species. One way I …
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As per issue #25, for some reason, the pipeline does not seem to work when integrated into the Nextflow pipeline, due to the absence of some python scripts. However, when I checked the directory conta…
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If provide genome by fasta and gtf, workflow will try to generate genome index and gene bed if they are not provided. It works fine when fasta and gtf are uncompressed. However, if any one of fasta an…
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Hi,
I have multiple seperated downloads from genome_updater, that I want to keep seperate. For example I have an Archaea, Bacteria and Fungus genome_updater directrory. Now I want to make a Taxor …
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https://wu-tz.github.io/2024/07/17/genome-anno/
主题：基因组注释相关参考： 基因组注释（一）：重复序列注释 | 生信技工 (yanzhongsino.github.io) 使用RepeatModeler从头预测基因组重复序列 | BioChen 博客 【基因组注释】RepeatMasker和RepeatModeler安装、配置与运行避坑 - 简…
Wu-tz updated
3 months ago
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