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Hi!
I'm attempting to install your program, but when configuring RepeatMasker it doesn't seem to find the required libraries. I'm pointing to a path that should contain them, but I get this error m…
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Hi Michael
Thank you for providing a very powerful tool. I got some errors when using DRAM-v.py annotations.
**The command was :
DRAM-v.py annotate -i BH0-vs2-pass2/for-dramv/final-viral-combin…
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I am trying to make a database with a mix of hmms, one pfam, that does not require additional arguments, and two KOfams that require them. This is part of a test I am doing for something else, so I ha…
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I'm encountering what seems like the same issue :
hmmer version: bioconda/linux-64::hmmer-3.3.2-h87f3376_2
```
$ hmmemit -h
# hmmemit :: sample sequence(s) from a profile HMM
# HMMER 3.3.2…
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### Description of bug
I'm trying to assemble some data with an HMM and the --corona switch, but it was erroring out in 3.15.3 with an exception. So I updated SPAdes to 3.15.4 and running the same co…
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Hi,
Im using python 2.7.12 on Ubuntu 16.04, and I just had this problem with SearchIO.parse when handling a 'hmmer3-tab':
### Script (portion)
with open ("%s%s" %(path_hmmFile,hmmFile),'rU') as …
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Hi,
I would need to run the equivalent of Interproscan on local protein profiles. When I run hmmscan (Hmmer3) with default parameters, I end up with many false positive, not find using InterProscan. …
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#### Since IMGT is default no additional tests need to be made, jut match existing ones.
- ~~mark todos on what is numbering scheme vs region scheme~~
- code explicit clean-up should be another …
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```
Hi,
I am trying to install ANARCI on ubuntu system with Python 2.7 and HMMER installed.
I ran the command: python2.7 setup.py install
Please see below the output, at the end it give…
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It only happens with prokka 1.14.6
https://github.com/tseemann/prokka/issues/598
`
Bio::SearchIO: hmmer3 cannot be found …