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Dear Alaina,
I've been trying to set up the latest version of liftoff in a MacBook (M1) and a linux-based HPC following all your instructions. Both conda and pip liftoff installation fail.
### c…
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MacBook M1 Max Pro
Dockerfile:
```
FROM ubuntu:focal as build
ARG MUDSKIPPER_VERSION
ENV DEBIAN_FRONTEND=noninteractive
ENV PATH=/root/.cargo/bin:$PATH
ADD https://github.com/OceanGen…
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| | |
|--------------------|----|
| Bugzilla Link | [PR27370](https://bugs.llvm.org/show_bug.cgi?id=27370) |
| Status | NEW |
| Importance | P normal |
|…
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Since installing augustus from source without root previleges wasn't easy for me, I thought posting here the commands I used for installation.
* If not already done, install [conda](https://docs.c…
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Hi!
We use samtools tview to generate some output we then share via an internal API endpoint. Historically, we used samtools 1.9 + miniconda and everything worked as expected.
However, we had to…
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As far as I can tell, there is currently no way to update genotypes in a bcf `Record`.
Related:
https://github.com/rust-bio/rust-htslib/blob/ed217c2fe460794d249e58a85db0b0c8a2929e55/src/bcf/record…
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I'm unable to get pysam to work with google storage urls, here's what I'm doing:
export HTSLIB_CONFIGURE_OPTIONS="--enable-plugins --enable-libcurl --enable-gcs"
pip3 install -v --no-use-wheels py…
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I am using STAR 2.7.9a. In the last two days, I am getting an error when running alignments with STAR (independently from the data and genome index I am using). What could be causing this error, which…
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Hi, I am not able to build with gcc version: `gcc (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0`
as I get the following error:
```
$ make
g++ -std=c++11 -O3 -funroll-loops -fopenmp -I./htslib -o nebula…
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Hi,
My usual CentOS6 server has an outdated libc.so.6 so I have to use a more recent OS. Sysadmin told me this cannot be updated, unfortunately. Anyway, on the other server (CentOS7) I downloaded t…