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https://github.com/cpanse/bfabricPy/blob/086dade16ffa3382cbafa29a905d11bf0b5e0270/bfabric/tests/test_bfabric_sample.py#L21
implement:
```{py}
def sample_save_library_illumina(self):
…
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Hi,
sickle always gives me an error when I specify -t illumina, telling me that the quality value of some read does not fall within the correct range for Illumina encoding but I know that this partic…
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editor preferred term: Illumina HiSeq X Five
alternative terms: HiSeq X Five
textual definition- A DNA sequencer that consists of a set of 5 HiSeq X Sequencing Systems.
definition source for the …
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Hi,
I did the following:
```
bwa mem -x pacbio pacbioRaw.fasta illumina.fasta |cut -f 1,2,3,4,5,6 >pacbioRaw_TO_Illumina.sam
```
```
tulipseed.perl --seedlength 385 --diploid --sam pacbioRaw_T…
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**Describe the bug**
Run ends with error due to a missing scipy import. I'm running a WGS trio from Illumina DRAGEN pipeline through Cravat with ClinVar, case-control, and SpliceAI modules.
**To …
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Dear John,
When I run ngmerge on Element Biosciences Aviti data I get the error
`Error! Quality scores outside of set range`
This is due to the extra quality of the Element Biosciences Aviti …
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Hello, I runned the following command :
`java -Xmx64G -jar pilon-1.24.jar --genome nano.fasta --frags illumina.sorted.bam --changes --fix all `
But the script end before with the following prob…
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Hi, I want to extract the reads from a sample with illumina PE reads, should I cat R1.fq.gz and R2.fq.gz together? When I cat two files together and set "-C", I got an error "Segmentation fault (core …
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This is a general lab protocol for Illumina read mapping and generating a consensus.
# Overall approach
Depending on your starting files **you might skip steps 1 and 2**.
1. Get a reference…
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Hello!
I wanted to express my gratitude for developing such excellent software! I recently assembled diploid haplotypes using pacbio hifi data, ont ultra long data, and hic data. I ran separate mer…