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Please delete the following PROD datasets and re-index. These are IMS derived datasets which are to be replaced.
Dataset 42391b7214c06b4e83dbeaf64d2a2a0a: HBM426.TBNF.988 ['image_pyramid', 'MA…
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https://www.researchgate.net/publication/334029427_Alternative_Software_zur_MALDI-TOF_MS_Auswertung page 29 to 31 shows the past workflow. This seems to be collateral damage of https://github.com/ecli…
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Hi.
(a) I am trying to run a pepchem converted t2d file from MALDI ToF/ToF 5800 in search gui. But the search gets cancelled every time after the file conversion. Pls see the attached file.
[er…
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When I am running Philosopher (version 3.4.13) on a set of TMT10-MS3 samples, I am reaching the "label-free quantification step" and experiencing the following error message:
```
...
time="10:23:…
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Hi Sebastian,
I would like to use MALDIQuant to analyse Bruker's MALDI-FTICR data. But I don't know how do I convert the raw file to mzML file or other MALDIquantForeign supported format. Or will…
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@mccalluc The directory structure section of the MALDI doc on the portal:
https://portal.hubmapconsortium.org/docs/assays/maldi-ims
has the word MxIF in the title:
![Screen Shot 2020-09-24 at 6 3…
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Hello,
We are running the `bioformats2raw` -> `raw2ometiff` pipeline on some imaging mass spectrometry data that is 32 bit float data. The data can sometimes be "sparse" and we see some weird arti…
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If you look at the lower resolution levels, it looks like something went wrong with the downsampling, where there are these stripes:
This could be an issue with the data being 32 bit float (I s…
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I'm still running that TMT pipeline on some CPTAC datasets and am getting a strange error with PeptideProphet where it claims it can't find a protein database. There are two odd quirks to this. First …
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## Feedback
__Help Desk Issue Tracker URL__: https://on.spiceworks.com/tickets/open/650/activity
__Message__:
Appears to be an issue with visualization of IMS data.
The only critical iss…