-
Hi Dr. Axtell,
Thanks for developing this useful software!! I've been attempting to utilize shortstack4.0.3 for both known and de novo miRNA prediction for wheat sRNA data. However, I encountered a…
-
Hi, I am using the mirTarRnaSeq package to look at the miRNA-mRNA interactions in human data. I want to do the univariate analysis using the gaussian distribution. When I do it for one miRNA then the …
-
Hi,
If you have experience with python or R, or you analyze small RNAseq data yourself, please consider to join us. We have several projects that are community-driven:
* [mirtop](https://github.…
-
Hi, I am using the singularity profile of smrnaseq (latest version) in rat, with specified Rat genome of Rn6. The output is fine except for the empty mirtop results.
Below is the log
```
(tool…
-
See also https://github.com/geneontology/go-releases/issues/91 - I had analyzed the changes at the July 14 snapshot, there were many changes that are expected again
https://docs.google.com/spreads…
-
**What is the SO term name and accession?**
SO:0001877 lncRNA
non-coding RNA generally longer than 200 nucleotides that cannot be classified as any other ncRNA subtype.
**Describe what you …
-
Hi,
I am trying to run the example but it did not work, I had to change to:
miRScore -mature ./TestData/ath_miRBase_miRNAs.fa -hairpin ./TestData/ath_miRBase_precursors.fa -fastq fastqs/* -king…
-
Using mirdeep2, we obtained the “miRNAs_expressed_all_samples_22_02_2024_t_08_01_36.csv” file.
Although it was convenient to have normalization values here, there were many duplicated mature and pr…
-
Hi, I am wondering how to generate "human_mirna_SNP_pseudo_miRBase.fa" in "fasta.Libs" directory. It is quite different from "human_mature_miRBase.fa" as many miRNA ids are different between them in a…
-
Hi,
I downloaded the human library from
```
wget -O human.tar.gz https://jh.box.com/shared/static/rj7ufy5v15uw7ytsyyrsryw99u7ml82j.gz
```
command but when running mirge I got the error "/human/…