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## 🐛 Bug
Hi!
The tutorial suggests various file types can be loaded, with various names, as long as the basename is in the metadata table. Meanwhile, I resorted to AIRR because MiXCR files seemed…
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This problem has been posted few days ago, but I am also facing the same issue when running
Generic-ont preset on the Nanopore data. I was wondering if there is a reason to this error and how can it…
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I am running MiXCR with
tag_pattern='^(UMI:N{12})(R1:*)\(R2:*)'
java -Xmx16g -jar $mixcr analyze generic-amplicon-with-umi \
--species hsa \
--assemble-clonotypes-by CDR3 \
…
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Hello ncborcherding,
I tried to use `Euclidean distance` to compare samples.
Thank you in advance for your great help!
Best,
Yue
```
combined.TCR
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This is a UMI distribution I see for one of my samples. I was wondering what parameters are suggested to modify to relax level of UMI filtering conducted here (possibly lower the UMI filtering thresho…
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Hello,
I am currently aware that I can get list of V-gene/V-transcript sequences from MiXCR Gene Library. I was wondering if there is a way to access the reference points for each of the V gene fe…
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Hello Nike,
Thank you so much for your detail explanation!
Unfortunately, it does not work on my system.
I worked with `scRepertoire` on version `2.0.3`. It works well on `positionalEntropy`,…
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Hello,
I am running generic-amplicon preset for my TCR data with UMI length of 12. I am getting high percentage of aritifical diversity eliminated and was wondering why this might be.
I am…
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Hello,
Is there a way to map the MiXCR clones to their specific reads from the input fastq.gz file? Thanks!
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## Bug
Hi, I keep getting an error trying to load any MiXCR output to Immunarch. Immunarch requires the clones.txt files from MiXCR, but MiXCR outputs clones.tsv files now, which differ in content …