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This is necessary to do the new sorting hack for obographs json.
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go-ontology wants to use the latest version of the ODK. Update our images.
Need to coordinate with @balhoff
https://github.com/geneontology/go-ontology/pull/17956
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I think we're missing error handling code for this block:
https://github.com/ontodev/robot/blob/master/robot-core/src/main/java/org/obolibrary/robot/IOHelper.java#L1709
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I want to import the gene ontology and the human phenotype ontology. Both give me some issues.
```python
from nxontology.imports import from_file
gene_ontology = from_file("http://purl.obolibra…
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@dhimmel
I took the liberty of seeing what it would take to implement `obonet` with my obo package:
```python
import networkx
from obo import Ontology
def read_obo(path_or_file):
#wit…
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- from_alignment_minidom
- from_dataframe
- from_obographs
- from_owl_graph
- from_rdf_graph
I think these are all :) Some of these are not even implemented yet, but lets be proactive! :)
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these will be fed to obographviz for visualization
add an axiom annotation using `` to indicate probability, prob * 10, e.g. for Pr(E)=0.7, do:
```
{
"sub": "GO:123",
"pred": "owl…
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Transferring an email thread into a ticket.
OBO files are typically 'terminals' in our release chains - i.e. final release products. It is very common to **hack** OBO files into shape after they ar…
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I am trying to figure out how MONDO represents Phenoseries.
Noonan syndrome 1 is OMIM:163950 and this corresponds to the phenoseries PS163950
https://omim.org/phenotypicSeries/PS163950
However, t…
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https://github.com/geneontology/obographs/releases/tag/v0.2.1 release in Feb
I'm surprised that ontobio ontol.py doesn't work with this? this release is incorporated in robot, are we not using this…