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Hi Lucas
I have just switched to gappa after years of using guppy and am enjoying the improvement and additions that you have made.
Is it possible to generate trees without the taxon labels - I no…
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Dear @spond,
I have encountered another problem while running GARD. Here is the part of the error messge.
> - __Analysis Version__: 0.1
>
> type: nucleotide
> rv: GDD
> How many site rate …
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**Submitting author:** @akrinos (Arianna Krinos)
**Repository:** https://github.com/AlexanderLabWHOI/EUKulele
**Version:** v1.0.2b
**Editor:** @will-rowe
**Reviewer:** @johanneswerner, @jcmcnch
**Arch…
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* Input of phylogenetic trees -
Is RAxML trees the only input tree used?
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I was wondering if we could have access to the placement file that SEPP produces when running deblur. The placement file has information regarding placement uncertainty (for example, look at here http…
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Hello,
I like the flexibility of the package and the ability to work with phylogenetic trees in a graphics oriented way. I think it could be made even better if you could control the display paramet…
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The help menu for the 'stitcher' program describes a taxon file that must be used, but it's not clear what format this should take or how it is used. There is a tutorial file for this program but it i…
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Dear Andreas,
I have a problem while running camitax. After installation it was working, but after some trials it is no more working, and it is giving an error after few steps. We don't understand if…
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Hi developer,
I want to learn more about relative evolutionary divergence (RED) including how it is calculated and what it is based on? Could you please give me more information?
Thank…
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Hello Pierre,
I have a conceptual problem. For a set of query sequences coming from metagenomic origin, I want to know the taxonomy. I have a reference tree with ~600 sequences. Should I:
- Pe…