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Hello,
I am currently having an oligo designed with m6A modifications to serve as a control strand for epinano SVM. The oligo will have an RRACA motif, where the first adenine is m6A and the second…
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Hello,
Occurs_at is not in the Relations Ontology, and its intended usage is the same as 'occurs_in', therefore we will deprecate occurs_at. Annotations should be reviewed and moved as suggested, …
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From today's multiorganism call - the group proposes to obsolete the following terms:
- [x] 'induction by symbiont of host defense response'
- [x] 'induction by symbiont of defense-related host c…
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Hi Yuchao,
Thanks for developing such wonderful tool!
I have tried out the tool, everything went well and I just got some amazing results for my single-cell multiome data.
However, I did get so…
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Hello! Thank you guys for the amazing GRN analysis package! I am eager to use it, but one of the key functions keeps on returning an error, regardless of which motif matrix or function parameters I us…
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Hello! Been having fun formatting some independent data with this package. I wanted to ask about how to properly create a custom motif set for input.
As an example, I've downloaded pwms from other …
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Hello,
I'm interested in using DeepEdit to identify A-to-I sites in my directRNA reads. I'm running your test data set, but I realized that for the sh 1.Reads_extract.sh, a target_site.bed file is…
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Hi,
I asked a similar question on the Google group, however I'm not sure whether the message got sent properly so I thought I would ask here as well.
I have stranded 150 bp paired-end reads (bul…
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https://mp.weixin.qq.com/s/QBBQ2TXQzNrjPILNi4EHdA
ixxmu updated
10 months ago
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These should be possible to describe as nucleotide alterations.
We need to check that we have the precise ncRNA structure annotated first.
srp7-C180U,omega176U,SPNCRNA.98:allele-68,C180U,U in…