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Hello.
It seems that with Prody version 2.4.1 (same behavior with the latest changes in `master`) not all unique ligand chains can be parsed for the attached complex (protein-ligand-nucleic acid) P…
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Most of the information in UniProt is already in GeneDB but
Uniprot may have information about catalytic activities and residues which we could potentially load into Chado
Original comment by: ValWo…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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here is an example of my report.txt for residue interaction analysis
HSD:A:424 (HSD) - SMALLMOLECULE
-------------------------------
Interacting chain(s): A
**Hydrophobic Interactions**
+---…
rflai updated
7 months ago
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I'm trying to run pyFoldX using Windows Subsystem for Linux, and have encountered two different problems that may or may not have to do with running it on WSL. I made sure to include the path to foldx…
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I wanted to run this package for the example provided in the tutorial, but I am getting below Error
ERROR: Failed to load OptiX shared library.
Could you please help me to address the issue?
I am p…
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This is a very good job, but I encountered the following error while running the first example:
`$ unigbsa-pipeline -i example/1ceb/1ceb_protein.pdb -l example/1ceb/1ceb_ligand.sdf -o BindingEnergy.c…
kdpan updated
9 months ago
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I've been talking with lots of people about what would be most useful to add in version 2 of SPICE. I've gotten lots of great suggestions. Here are some ideas in no particular order.
- **Solvated…
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.blend file:
None
Steps to reproduce:
Click "Asset Bar" in 3.6.12
Screenshots or rendered images:
None
Error message from Blender console:
None
OS: Windows 10
Blender version: 3.6.12…
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Similar to #465 I am getting an error with hmmsearch when running with multimer
Full output from this command:
```
run_alphafold.sh -d $DATA_DIR -o $OUTPUT_DIR -m multimer -f ./com_triplechain.…