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I excluded the pretraining module in the code for running this kind of dataset. Please suggest what modification I need to perform in the existing code.
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Hi,
we've been trying to run the latest versions of some nf-core pipeline (e.g. nf-core/methylseq) which require Nextflow >=22.10.01, but AGC doesn't seem to work with Nextflow > 22.04.03. Is there…
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Hi,
I noticed that there are a lot of 'NA' values in raw PDUI matrix generated from DaPars2.
Does these ’NA‘ values mean that it is uncertain whether to use a distal polyA site for a certain gene?
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AIBio updated
2 years ago
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Hello
I am very interested in evaluating your package on human brain scRNAseq samples.
I tried it with all default (seurat object as input) but it only identifies macrophage and endothelial cells …
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Hello author,
Congratulation you got the competition deconvolution.
I just have a question naive.
For DAISM-DNN user must be have califra.txt file ?
I.e.
I have scRNAseq(.h5ad) as referen…
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I was wondering whether you could provide the intermediate files used as examples in this amazing tutorial.
I downloaded some files, such as "ERR522959_2.fastq", "ERR522959_1.fastq", to follow alo…
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Hi Aditya @adyprat
Thanks very much for sending the CSV files. I am wondering if it will be feasible to edit the script and integrate only scRNAseq and CODEX only? We want to map those UMAP cluste…
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Hi!
I get this error when running a very simple wald test. I saw that you solved the same problem two years ago but didn't publish how exactly. Could you please guide me here too?
Here is the whol…
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Hi,
Thanks for making RISC. I am using RISC on big data with 270,000 cells. I got an error as follows when I using RISC on my data. It's seems my data is too large for RISC. Can I just use variable g…