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With oncotator 1.9.8 I have this error:
```
2018-03-20 09:37:43,124 INFO [oncotator.utils.ConfigUtils:197] Could not find config file (vcf.in.config). Trying configs/ prepend.
2018-03-20 09:37:43…
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Dear Author,
I got the message as shown below when trying to run the final step run_isown.pl:
perl /workplace/Software/ISOWN/bin/run_isown.pl 181023001/ 181023001/181023001.isown.txt "-trainingS…
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Hello, thanks for updates for your tool.
We're trying to update our docker containers with your tool but registered different results for `v1.2.0` and `v1.2.2`:
Run commands:
```
/soft/msisensor…
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Clonal Hematopoiesis, but it's too tricky to spell. :)
**Here's how we are going to do this:**
Rough idea: we swap the TN labels, do unmatched variant calling on the normal, then genotype the tu…
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Hi,
Thank you all for your progress with this tool. I have a gemini database with ~2000 individuals WGS variants. For reanalysis of old cases, we would like to be able to run segregation queries f…
8nb24 updated
5 years ago
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To whom it may concern,
I am writing to inquire whether the authors of the program had compared the results from winnowmap -ax map-pb and -ax asm20 bam file.
Minimap2 recommends using asm20 for…
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Hi, thanks for sharing your nice tool! I was wondering if you could give an example of file input or a description of the data.txt input file. I could not find it in the Wiki/README.
Thanks!
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Feature request - Markduplicate
Hi, everybody. In the past, we developed a pipeline GATK to identify somatic variants from Illumina amplicon-based gene panel. Now we are changing our pipeline to a …
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Step to reproduce:
1. Go to SCXA home page and click on `CFTR` link from the list of examples
**Expected result:**
In the resulting table the `Number of assays` should be populated of the number of…
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I'm interested in modelling this ClinVar record:
https://www.ncbi.nlm.nih.gov/clinvar/RCV000087646/
I assume mosaicism is more accurately described as a mode of inheritance rather than a genotype,…