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Trying to capture an email discussion that grew out of the Common Repository Working Group and has been on the back burner with all of us for some time... How do we annotate AIRR-seq data sets with Ge…
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Hi,
I have analyzed a simple data by command:
`/SGRNJ03/randd/zhouxin/software/TRUST4/run-trust4 -t 10 -u ./NJU_Pt_2_2_3Nlib/r2.fq --barcode ./NJU_Pt_2_2_3Nlib/r1.fq --barcodeRange 0 23 + -f /SGRN…
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M. tuberculosis specific TCRs from two papers:
1. PMID:28636589
Glanville J, Huang H, Nau A, Hatton O, Wagar LE, Rubelt F, Ji X, Han A, Krams
SM, Pettus C, Haas N, Arlehamn CSL, Sette A, Boyd SD, …
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Hi,
I have populated the xlx spreadsheet template with antigen-specific TCR repertoire data for responses towards a deamidated gluten epitope in celiac patients and a CMV pp65 epitope in healthy in…
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Dear All,
I am trying to analyze with the following kit TCR data.
[https://www.takarabio.com/learning-centers/next-generation-sequencing/technical-notes/immune-profiling/tcr-repertoire-profiling-f…
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Hi,
Is there a way to export all aligned reads from the vdjca file without needing to specify all of the clone ids or index file?
Thanks,
Dante
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A metadata clarification question - from a UI/display perspective on the iReceptor Gateway...
If one cell sorts into say different types of B cells, and therefore has a cell_subset, would one alway…
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It is said that hindsight is 20/20 and I'm not sure that I see that clearly, but given the expansion of the AIRR Data Model, some flaws are becoming apparent. Here's your chance to pile on!
What di…
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@grst What a great tool, very much needed and appreciated! Thank you.
Towards making this better still and more enduring (including for VDJ biologists), I have a few comments/suggestions:
### A…
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I am trying to install Scirpy using anaconda/Jupyter on my desktop window.
**when I try this: conda install -c conda-forge -c bioconda scirpy
I go the error message:**
```
Collecting package…