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What is the significance of the contigs whose names do NOT end in F or R?
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Heys,
I am working with two closely related species and for both I have HiFi and Hi-C data. I did the exact same for both species and for species 1, after SALSA, I get a better assembly. However, f…
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I am following these commands. However, I am getting blank output file.
minimap2/minimap2 -x ava-pb -t8 pb-reads.fq pb-reads.fq | gzip -1 > reads.paf.gz
# Layout
miniasm/miniasm -f reads.fq reads…
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![graph-1](https://user-images.githubusercontent.com/22489982/117282927-dadad000-ae97-11eb-936e-6f208842b4e3.png)
This is a real example in unitig graph (`*.hic.p_utg.gfa`) that seems to be an error:…
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Hi,
I encountered an error in the very last step of `asm_sge/8-hicPipeline/final_contigs/8-hicPipeline/hic_scaff.sh`
(not in `asm_sge/8-hicPipeline/hic_scaff.sh`!
`asm_sge/8-hicPipeline/hic_sca…
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Hi,
I used mecat2 to assemble pacbio reads recently. The first three step were successfully done. But when I run the last mecat2canu step. Something wrong happened. It appeared as follows. The comman…
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Thanks for creating such a nice assembler.
In the research we're doing, we're looking to exploit the relationship between contigs in the assembly graph. Several other tools, such as `Recycler`, `Gr…
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One of the "problems" I'm having with metagenome graph-based differential abundance (implemented in #303) is that there are *a lot* of cDBG nodes, so even catlases built with R5 have *a lot* of domina…
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Hi, I am trying to run unitig-caller in a HPC to be used in a GWAS with pyseer.
Every time I try to use it the process is killed since the it runs out of memory. I have tried with up to 512GB RAM, a…
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Hi,
Sorry for posting so many issues.
I am running MaSuRCA 3.2.6 and I get the below error.
[Fri Aug 31 14:49:21 AEST 2018] Processing pe library reads
[Fri Aug 31 14:49:21 AEST 2018] Proces…