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The 10x Fixed RNA Profiling kit has some benefits with respect to the standard kit. For example, cells can be stored before library prep, there is a gene targeting mechanism based on specific targete…
rob-p updated
2 months ago
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Hi,
I am going to use SCATS to analyze 10x scRNA-seq data. After running cellranger, I can only get one bam file containing many cells. How can I generate metafile for SCATS step2? Can you give an ex…
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Hello!
Thank you all for developing a really exciting piece of software that will have real impact on the future development of scRNAseq analysis. I'm writing because I am interested in applying mi…
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Dear developers,
When trying to run the example following `run_crema_10Xpbmc.Rmd`,
it says one of the input was the 10x PBMC multiome pre-processed by `data_10Xpbmc.Rmd`.
However, this file can…
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### What can be improved?
Parquet is a fast and highly compressible open source file type for tabular data. Compared to csvs it can save around 10x the storage space. It is already integrated with Pa…
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### Describe the bug
Building ASP.NET MVC applications with .NET 9 is 2x slower than .NET 8 for basic applications and 10x slower for applications that utilize several client-side libraries (e.g. wit…
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### Description of feature
As stated in the [10X docs](https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/running-pipelines/cr-flex-multi-frp):
> Important: In the examples be…
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### Description
Just like the title says. In addition, I have a folder on my local HD that just has shortcuts to about a dozen SMB servers (standard shortcuts to locations like \\ServerName), and it …
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How is MS Windows builds 10X ISO IMAGE available to download and use for developers?
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10x atac-seq data does not have UMI. Souporcell gives:
```
Traceback (most recent call last): File "/opt/souporcell/souporcell_pipeline.py", line 104, in assert float(num_umi) / float(num_read_te…