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Hi,
When I use the following file as input to vcf2db:
[working.txt](https://github.com/quinlan-lab/vcf2db/files/1395206/working.txt)
the database is created as expected.
But when I use this …
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Greetings,
I am trying to run the VCF file of 38,000 variants. The rest of the databases run effiicently but it's taking almost 20-30 minutes in dbnsfp (although the index is generated) annotation.…
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Dear sir,
I use the command below:
python bin/pyTMB.py -i WES-N0440vs5.gnomad.g1kpon.vcf --bed "/Everythings/bed/hg38/Roche_KAPA_HyperExome_hg38_capture_targets.bed" --dbConfig config/annovar --varC…
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Dear Prof. Wang,
I notice "hg38_gnomad_genome.txt" have multiple allele frequency in different population. I want to use this file to annotate my SNPs, however, I only want to show "gnomAD_genome_…
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@rjansen1984 (and others) als je hier lijst met tools kunt opschrijven die we graag in Galaxy zouden willen zien?
- [x] Canu (conda: yes, [github repo](https://github.com/marbl/canu), [readthedoc…
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Dear Dr. Wang,
I am trying to use dbSNP identifiers based filtering as the following command. However, I found the input file: hg19_snp138.txt is not available in my current system. How to downloa…
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Dear professor,
Thanks a lot for supplying such a useful tool.
I am here want to ask a question.
here is a 29 base deletion variant, but the annotation is 25 base, is there any reason for this? th…
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Hello,
I'm having trouble with annotating a custom-made annotation file on a vcf file and finally getting the annotated vcf file.
I've read User Guideline on Generic mutation annotation and tried …
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## WGS (Whole Genome Sequencing)
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Hello, thanks for the fantastic tool!
I have been using it for many years, but I am facing a bug I have never encountered.
I am running Neopredpipe for a set of samples, separating them by SNPs an…