bioinfo-pf-curie TMB issues

bioinfo-pf-curie / TMB

Tumor Mutational Burden

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issues

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Add `.bcf.gz` support

#28 bounlu opened 2 months ago
0
Add config files for more tools

#27 bounlu opened 2 months ago
0
Update README.md

#26 nservant closed 3 months ago
0
omitting `--filterNonCoding` results in error

#25 bounlu opened 4 months ago
0
Warning : given vaf >> vaf in config. wrong vaf threshold ?

#24 dbhayal9 opened 6 months ago
3
Nservant patch 1

#23 nservant closed 10 months ago
0
Issue in creating config.yml file for vep annotated vcf file

#22 Raghu9721 opened 1 year ago
2
`--filterLowQual` does not work

#21 bounlu opened 1 year ago
3
Configuration file for Ensembl VEP

#20 MGCarta opened 1 year ago
1
correct description for `--minMapq` argument

#19 bounlu closed 1 year ago
0
pyEffGenomeSize throws error - single positional indexer is out-of-bounds

#18 jpcartailler opened 1 year ago
0
Typo

#17 rhagenson closed 10 months ago
1
BED file header

#16 nservant opened 1 year ago
0
An error is reported while running

#15 huilin-al opened 1 year ago
1
pyEffGenomeSize.py error

#14 wt12318 closed 1 year ago
2
How to use for WGS data

#13 praveenraj2018 closed 1 year ago
2
Usage question on databases.yml and calling.yml

#12 FriederikeHanssen closed 2 years ago
1
Add to conda

#11 FriederikeHanssen closed 2 years ago
0
Minimum alternative allele depth

#10 HMR24 opened 2 years ago
1
how to use snpeff annotation with databases gnomAD，1K

#9 user-tq opened 2 years ago
3
Is the VEP annotated vcf supported?

#8 gudeqing closed 10 months ago
1
Which bed file should be used for input.

#7 lincj1994 closed 3 years ago
1
vcf file contains two sample

#6 wangdepin opened 3 years ago
2
FileNotFoundError: [Errno 2] No such file or directory: 'pyeffg.intersect.bed'

#5 deb0612 opened 3 years ago
6
The format of input

#4 deb0612 opened 3 years ago
1
sys.stderr.write("Error: " + len(vcf.samples)

#3 deb0612 opened 3 years ago
3
Filtres coding / Non coding

#2 Ephedria opened 3 years ago
4
Filtre LowQual trop stringent

#1 tomgutman opened 4 years ago
0