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Hello
when runnig `run_inference.py inference.output_prefix=temp/test 'contigmap.contigs=[150-150]` default pdb is set to `$PREFIX/lib/python/site-packages/rfdiffusion/inference/../../examples/in…
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Hi,
thanks a lot for your work.
I want to know how I can use metabinner to bin the contigs combined from different samples?
Sincerely,
Gia
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It seems mason_simulator crushes if there are >150 contigs in the fasta file.
mason_simulator -ir myfasta.fa -n 5000 -o left.fq -or right.fq
Error message:
MASON SIMULATOR
===============
…
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Hi @anuradhawick,
I am running LRBinner for ONT contigs generated from metaFlye. I would like to bin the contigs and come across this tool for binning of long reads data, however, I am running in t…
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### Description
As a bioinformatician, I want to construct a lookup table/mapping of contigs to genomic coordinates.
### Acceptance criteria
- [ ] Extract contig information from chromosome.dat fi…
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This issues describes the procedure to search all of our contigs against RdRP and presents results.
(Slack thread: https://hackseq-rna.slack.com/archives/C012H9SDQCA/p1615948152031200)
Input: FAST…
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Hello, can I use more than 2 assemblies and more than a pair of pe fastq files? For example 3 assemblies and 3 pe fastq files?
Or should I just concatenate them into R1 and R2
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Hi, I ran purge_dups on my assembly and all contigs are classified as JUNK.
purge_dups git commit 1964aaaa7826b0e323dc3c4791803cd49de2207a
minimap2 2.17-r974-dirty
python 3.7.4
gcc (GCC) 4.8.5 …
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Hi,
Thanks for the time.
May I please know where can I find the contigs.fasta file which contains all the contigs used for reassembled_bins? Also the *.bam files?
There are assembly.fa and *.b…
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Hi,
I am running DAS Tool on conda environment. Not able to figure out what is the issue and how to resolve.
I am getting this error:
DAS_Tool -i concoct_contigs2bin.tsv,maxbin_contigs2bin.tsv,m…