-
Hi @EricKutschera
When I ran ESPRESSO, the abundance file reported around 13,000 genes, but rmats-long produced a `differential_genes.tsv` file with only 9,800 genes. I'm a bit confused about how …
-
Dear Writer !
Thanks for your useful pipline, but I meet an error when use SubPhaser.
My command
`subphaser -i groups_genome.fasta -c groups_sg.config`
My configue file
![image](https…
-
Hello,
I have to plot a histogram of the relative abundance of the different ASVs, and based on this suggest a cutoff for removing low abundance ASVs.
How can I plot the relative abundance of ASVs a…
-
Hi,
Thanks for creating this excellent package for analysing PICRUSt2 output data. I have been looking for something like this for a while now.
I have run the analysis main pipeline (ggpicrust2(…
-
Hello,
Hope you're doing well! I'm curious what your thoughts are for dealing with interpreting and visualizing sourmash signatures given some metadata.
My workflow is:
1. compute sourmash sig…
-
Hi there,
Can you clarify why Intensity column should be used over iBAQ column when importing the data according to: (https://www.bioconductor.org/packages/devel/bioc/vignettes/proDA/inst/doc/data-…
-
Hi, thanks in advance for taking the time to answer this question. What are the constraints of using SUPPA with PacBio sequencing data if any? Thanks again
aa9gj updated
3 years ago
-
We should repeat the analysis after filtering the data removing potentially poor quality features. Potential criteria could be:
- RSD in QC samples > 30%
- *weights*/detected calls
-
This thread should be reserved for requesting the addition of new papers and repos to be added in the repository, since we are entering the roaring 20s.
-
Hi,
I just find a strange problems. When ran same input dataset twice, I got totally different netmoss score plot. For example, at the 1st time running, bacteria1 with the highest netmoss score was…