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Hi,
I'm trying to use your software to build model based on melo epigenomics data. I'm binarized my bam file and I performed the model with the learnModel command.
Now, I'm trying to used this m…
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Here is a list (via Marcos) of the current repositories indexed by BioCaddie. The number of datasets in each repo is shown between brackets. This list could be useful for us to identify target reposit…
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http://epigenomics.sdsc.edu:8000/setqc/617/
error msg:
```
[24/Sep/2019 09:30:21] "GET /setqc/allsets/ HTTP/1.1" 200 915401
explist: ['ATAC-seq', 'ATAC-seq', 'ATAC-seq', 'ATAC-seq']
[24/Sep/20…
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We don't have gene sets or signatures generated by the IDG. Also, the LINCS program is missing, so having only IDG is weird.
These libraries can be associated with the following programs:
Achill…
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Hey
I am trying to run the whole pipeline for crop-seq, i am at the assign_gRNA_cells.py step and it is giving error.
File "assign_gRNA_cells.py", line 359, in
prj.add_sample_sheet()
Fil…
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This is an important model contribution to both deep learning and epigenomics and we should make sure it is thoroughly documented. I’m happy to start creating issues and pull requests for updating doc…
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**Proposed Domain**
Bioinformatics
**Content Summary**
I don't know if this would go in the existing [page](http://sciwiki.fredhutch.org/generation/human_shareDeposits/) about data sharing, b…
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In your criteria in filtering cells based on ratio, it seems that you calculated the ratio of sequencing reads belong to the "bins" overlapped with promoter region.
However, this ratio would be affec…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/itsvenu/ALPS
Confirm the following by editing eac…