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After adding ~3000 files or so, `k2 add-to-library` fails with this error
```
+ k2 add-to-library --db k2mdb --file /avilpage.com/anand/GCF_001347155.1_7054_6_6_genomic.fna
Calculating MD5 sum for …
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I'm trying to use this command line to annotate several genomes in FASTA format that exist in a directory, but the problem is that it only annotates one genome
command line: prokka allgenomes/*.fn…
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Running command with --min-len-cnv 10000; gave me the following error.
spectre::2024-09-30 22:53:53,318::ERROR::spectre.analysis.analysis> Minimum CNV length must be greater then 10000 base pairs…
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Hi,
I met an unexpected error when run the strain cluster:
(/common/yinlab/xinpeng/conda_env/operams) [xinpeng@login1.swan new]$ cat /lustre/work/yinlab/xinpeng/final_course_project/glacier_alga…
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Hello,
I'm trying to run `eukdetect --mode runall --configfile default_configfile.yml --cores 16` and I'm getting this error:
```
02/10/2022 16:00:54: Parsing config file ...
Traceback (most re…
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Hi there!
I have tried multiple ways including running the docker version of blast and every time I am not able to complete the blast run. It probably is something I am doing differently, but I am …
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Hi there,
I have installed eggnog through conda and I have made a custom database with Drosophilidae proteins to annotate against. To do that I execute:
emapper.py --output_dir . -o testing_uncl…
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Hi,
I have tried generating tab file by pasting all the filenames and paths in excel and later converted that CSV file using this command.
`sed -e 's/,/\t/g' input.csv > input2.tab`
and then …
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Hi everyone,
I've been running the aMeta pipeline for over a week (I have many samples) but it got stuck in a step for days. I cancelled the run and then I run it again with --rerun-incomplete.
…
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I was trying to download viral reference genome while exercising the 'Advanced FASTQ processing' section of the biostar handbook. Here are the commands I run;
wget -nc http://data.biostarhandbook.c…