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bash create_Drop-seq_reference_metadata.sh \
-n Homo_sapiens_genome_annotation \
-r /mnt/d/linux/ceshi/hg38.fa \
-s Human \
-g /mnt/d/linux/ceshi/hg38.gtf \
-o /mnt/d/linux/ceshi
Er…
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A good starting point is Pfam_SARS. I reviewed it a few weeks ago, and IIRC it has pretty good coverage of Betacov genes, but doesn't include some of the genes towards the 3' end found in other genera…
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**Description**
I am encountering an issue with Bactopia versions 3.1.0 and 3.0.0 in my HPC environment. When submitting Bactopia jobs to the SLURM scheduler, the jobs consistently fail after around …
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Hello,
I am using genomeToTranscript function to convert genomic sites (positions) to transcripts position.
`edbx_1
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Hello
please help me to solve this problem
I am not sure whether my small Ram is the reason behind this error or not
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## Environment
- [ ] Using a Docker container (include the `IMAGE I…
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In table.smk, the rule vembrane_table calls get_vembrane_config to get the parameters for the vembrane header table. This should add the annotation fields from config.yaml.
Example from config.y…
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Dear author,
Thanks for developing this tool!
I am testing a few regions and found this strange results. This TRF annotated region has a 52bp INS, but it is not shown in the otter local assembly…
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### Current Behavior
Currently, the tool uses the hg38 endpoint for annotations, and all annotations are thus based on the hg38 build.
### Proposed Solution
- Investigate and confirm the curr…
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Hello,
I apologize if a similar issue has been posted elsewhere, but I did not find one when I searched.
I am trying to annotate a new reference genome (a marine fish; assembly is near-chromosom…
jtoy7 updated
2 months ago
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Hi, everyone:
I am running docker/singularity version of MitoHiFi with apptainer as:
`apptainer run -C -B /home -B /project -B /scratch -W ${SLURM_TMPDIR} mitohifi.sif python3 /opt/MitoHiFi/src/…